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  5. Potri.012G111900

Potri.012G111900


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.012G111900
Cluster HCCA clusters: cluster_0143

Target Alias Description ECC score Gene Family Method Actions
At1g03540 No alias Pentatricopeptide repeat-containing protein At1g03540... 0.03 Orthogroups_2024-Update
At1g74600 No alias Pentatricopeptide repeat-containing protein At1g74600,... 0.03 Orthogroups_2024-Update
At5g06540 No alias Pentatricopeptide repeat-containing protein At5g06540... 0.03 Orthogroups_2024-Update
Brara.C02940.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.F03378.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.K00527.1 No alias RNA editing factor *(MEF29) 0.03 Orthogroups_2024-Update
HORVU5Hr1G105080.1 No alias RNA editing factor *(OTP85) 0.02 Orthogroups_2024-Update
PSME_00037497-RA No alias (at4g13650 : 692.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00044871-RA No alias (at2g39620 : 426.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032867 DYW_dom 585 706
IPR002885 Pentatricopeptide_repeat 410 457
IPR002885 Pentatricopeptide_repeat 307 354
IPR002885 Pentatricopeptide_repeat 181 204
IPR002885 Pentatricopeptide_repeat 487 508
IPR002885 Pentatricopeptide_repeat 108 133
IPR002885 Pentatricopeptide_repeat 382 402
IPR002885 Pentatricopeptide_repeat 550 578
IPR002885 Pentatricopeptide_repeat 207 235
No external refs found!