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  5. Potri.013G006100

Potri.013G006100


Description : chloroplast RNA binding


Gene families : OG_42_0003865 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003865_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.013G006100
Cluster HCCA clusters: cluster_0030

Target Alias Description ECC score Gene Family Method Actions
At1g09340 No alias chloroplast RNA binding [Source:TAIR;Acc:AT1G09340] 0.03 Orthogroups_2024-Update
Bradi4g08030 No alias chloroplast RNA binding 0.03 Orthogroups_2024-Update
Glyma.03G230000 No alias chloroplast RNA binding 0.05 Orthogroups_2024-Update
Glyma.19G227700 No alias chloroplast RNA binding 0.05 Orthogroups_2024-Update
HORVU2Hr1G029230.1 No alias endoribonuclease *(CSP41) 0.05 Orthogroups_2024-Update
HORVU2Hr1G036220.1 No alias endoribonuclease *(CSP41) 0.06 Orthogroups_2024-Update
HORVU2Hr1G053340.3 No alias endoribonuclease *(CSP41) 0.04 Orthogroups_2024-Update
HORVU4Hr1G052270.4 No alias endoribonuclease *(CSP41) 0.05 Orthogroups_2024-Update
HORVU5Hr1G009200.2 No alias Unknown function 0.06 Orthogroups_2024-Update
Kfl00044_0410 kfl00044_0410_v1.1 (at1g09340 : 487.0) Encodes CHLOROPLAST RNA BINDING... 0.04 Orthogroups_2024-Update
MA_196108g0010 No alias (at1g09340 : 139.0) Encodes CHLOROPLAST RNA BINDING... 0.07 Orthogroups_2024-Update
Mp1g11680.1 No alias endoribonuclease (CSP41) 0.05 Orthogroups_2024-Update
PSME_00001882-RA No alias (at1g09340 : 556.0) Encodes CHLOROPLAST RNA BINDING... 0.02 Orthogroups_2024-Update
Pp1s71_283V6 No alias nad-dependent epimerase dehydratase 0.05 Orthogroups_2024-Update
Sobic.008G066100.1 No alias endoribonuclease *(CSP41) 0.03 Orthogroups_2024-Update
Solyc06g073260 No alias chloroplast RNA binding protein (AHRD V3.3 *** AT1G09340.1) 0.06 Orthogroups_2024-Update
Sopen06g029620 No alias NAD dependent epimerase/dehydratase family 0.02 Orthogroups_2024-Update
evm.model.tig00021181.14 No alias (at1g09340 : 348.0) Encodes CHLOROPLAST RNA BINDING... 0.03 Orthogroups_2024-Update
evm.model.tig00021720.14 No alias (at1g09340 : 242.0) Encodes CHLOROPLAST RNA BINDING... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA InterProScan predictions
MF GO:0050662 coenzyme binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001509 Epimerase_deHydtase 57 274
No external refs found!