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  5. Sopen12g022350

Sopen12g022350


Description : PPR repeat family


Gene families : OG_42_0008876 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008876_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen12g022350
Cluster HCCA clusters: Cluster_194

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G022787 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 411 438
IPR002885 Pentatricopeptide_repeat 446 475
IPR002885 Pentatricopeptide_repeat 297 330
IPR002885 Pentatricopeptide_repeat 233 279
IPR002885 Pentatricopeptide_repeat 547 593
IPR002885 Pentatricopeptide_repeat 160 210
IPR002885 Pentatricopeptide_repeat 336 386
IPR002885 Pentatricopeptide_repeat 477 526
No external refs found!