1. Home
  2. Species
  3. Populus trichocarpa
  4. Sequence
  5. Potri.013G079600

Potri.013G079600


Description : Transducin family protein / WD-40 repeat family protein


Gene families : OG_42_0001305 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001305_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.013G079600
Cluster HCCA clusters: cluster_0009

Target Alias Description ECC score Gene Family Method Actions
At5g16750 No alias Transducin family protein / WD-40 repeat family protein... 0.05 Orthogroups_2024-Update
Bradi5g20040 No alias Transducin family protein / WD-40 repeat family protein 0.1 Orthogroups_2024-Update
Brara.J01854.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Brara.J02073.1 No alias SSU processome assembly factor *(TOZ) 0.07 Orthogroups_2024-Update
Cre07.g344050 No alias Transducin family protein / WD-40 repeat family protein 0.02 Orthogroups_2024-Update
GRMZM2G014276 No alias Transducin family protein / WD-40 repeat family protein 0.05 Orthogroups_2024-Update
HORVU2Hr1G106110.11 No alias SSU processome assembly factor *(TOZ) 0.08 Orthogroups_2024-Update
Kfl00871_0040 kfl00871_0040_v1.1 (at5g16750 : 795.0) Encodes a nucleolar localized WD-40... 0.04 Orthogroups_2024-Update
Pp1s301_39V6 No alias wd40-repeat protein 0.02 Orthogroups_2024-Update
Seita.7G219600.1 No alias SSU processome assembly factor *(TOZ) 0.11 Orthogroups_2024-Update
Sobic.006G198600.1 No alias SSU processome assembly factor *(TOZ) 0.08 Orthogroups_2024-Update
Solyc03g097160 No alias Transducin/WD40 repeat-like superfamily protein (AHRD... 0.03 Orthogroups_2024-Update
Sopen03g027900 No alias WD domain, G-beta repeat 0.05 Orthogroups_2024-Update
evm.model.contig_3462.1 No alias (at5g16750 : 203.0) Encodes a nucleolar localized WD-40... 0.02 Orthogroups_2024-Update
evm.model.tig00000704.60 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
evm.model.tig00000704.61 No alias (at5g16750 : 313.0) Encodes a nucleolar localized WD-40... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
BP GO:0006364 rRNA processing IEA InterProScan predictions
CC GO:0032040 small-subunit processome IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001680 WD40_repeat 533 565
IPR001680 WD40_repeat 434 472
IPR001680 WD40_repeat 570 607
IPR001680 WD40_repeat 180 217
IPR001680 WD40_repeat 94 131
IPR001680 WD40_repeat 493 523
IPR001680 WD40_repeat 63 89
IPR001680 WD40_repeat 137 175
IPR001680 WD40_repeat 389 429
IPR013934 SSU_processome_Utp13 672 805
No external refs found!