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  5. Solyc03g006260

Solyc03g006260


Description : Calcium-binding EF-hand (AHRD V3.3 *-* A0A103XMB0_CYNCS)


Gene families : OG_42_0001514 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001514_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc03g006260
Cluster HCCA clusters: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
Bradi3g09350 No alias sodium/calcium exchanger family protein /... 0.02 Orthogroups_2024-Update
Glyma.13G272100 No alias sodium/calcium exchanger family protein /... 0.04 Orthogroups_2024-Update
Pp1s6_337V6 No alias calcium ion binding 0.03 Orthogroups_2024-Update
Solyc07g062700 No alias sodium/calcium exchanger family protein /... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA InterProScan predictions
CC GO:0016021 integral component of membrane IEA InterProScan predictions
BP GO:0055085 transmembrane transport IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
BP GO:0016049 cell growth IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
BP GO:0040007 growth IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
InterPro domains Description Start Stop
IPR004837 NaCa_Exmemb 67 243
IPR004837 NaCa_Exmemb 547 691
IPR002048 EF_hand_dom 425 491
IPR002048 EF_hand_dom 288 354
No external refs found!