Potri.014G038900

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG_42_0002868 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002868_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Populus release: Potri.014G038900
Cluster	HCCA clusters: cluster_0027

Target	Alias	Description	ECC score	Gene Family Method
Bradi2g14520	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	Orthogroups_2024-Update
Brara.A00548.1	No alias	RNA editing factor *(MEF8)	0.03	Orthogroups_2024-Update
HORVU1Hr1G094060.2	No alias	RNA editing factor *(DYW2)	0.03	Orthogroups_2024-Update
Seita.3G123600.1	No alias	RNA editing factor *(DYW2)	0.03	Orthogroups_2024-Update
Sopen07g011180	No alias	DYW family of nucleic acid deaminases	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	73	93
IPR002885	Pentatricopeptide_repeat	168	197
IPR002885	Pentatricopeptide_repeat	136	164
IPR032867	DYW_dom	321	419

External Links

No external refs found!