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  5. Sopen12g024140

Sopen12g024140


Description : hypothetical protein


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen12g024140
Cluster HCCA clusters: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
LOC_Os10g01440 No alias retrotransposon protein, putative, Ty1-copia subclass 0.02 Orthogroups_2024-Update
Solyc07g009390 No alias No description available 0.02 Orthogroups_2024-Update
Solyc08g063060 No alias No description available 0.03 Orthogroups_2024-Update
Sopen01g003530 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen01g025970 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen01g027300 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen02g009570 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen09g024800 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen11g019290 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen11g022040 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen12g024470 No alias Domain of unknown function (DUF4219) 0.03 Orthogroups_2024-Update
evm.model.contig_3584.1 No alias (p10978|polx_tobac : 128.0) Retrovirus-related Pol... 0.01 Orthogroups_2024-Update
evm.model.contig_4573.1 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
evm.model.contig_577.4 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

No InterPro domains available for this sequence

No external refs found!