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  5. Sopen12g025220

Sopen12g025220


Description : Retrotransposon gag protein


Gene families : OG_42_0000683 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000683_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen12g025220
Cluster HCCA clusters: Cluster_366

Target Alias Description ECC score Gene Family Method Actions
Potri.001G215900 No alias Function unknown 0.02 Orthogroups_2024-Update
Sopen07g006060 No alias Reverse transcriptase-like 0.03 Orthogroups_2024-Update
Sopen09g008960 No alias Retrotransposon gag protein 0.05 Orthogroups_2024-Update
Sopen10g007420 No alias Retrotransposon gag protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 309 398
No external refs found!