Sopen12g027180

Description : Reverse transcriptase (RNA-dependent DNA polymerase)

Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen12g027180
Cluster	HCCA clusters: Cluster_24

Target	Alias	Description	ECC score	Gene Family Method
HORVU1Hr1G007530.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
LOC_Os04g21580	No alias	retrotransposon protein, putative, unclassified, expressed	0.02	Orthogroups_2024-Update
Sopen01g012860	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.01	Orthogroups_2024-Update
Sopen04g035310	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen06g006510	No alias	Chromo (CHRromatin Organisation MOdifier) domain	0.03	Orthogroups_2024-Update
Sopen07g021480	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.01	Orthogroups_2024-Update
Sopen10g008020	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.04	Orthogroups_2024-Update
evm.model.tig00021758.17	No alias	(p31843\|rrpo_oenbe : 98.2) RNA-directed DNA polymerase...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	InterProScan predictions
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR005162	Retrotrans_gag_dom	204	300
IPR001584	Integrase_cat-core	1283	1394
IPR000477	RT_dom	741	900

External Links

No external refs found!