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  5. Sopen12g027350

Sopen12g027350


Description : Retrotransposon gag protein


Gene families : OG_42_0001127 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001127_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen12g027350
Cluster HCCA clusters: Cluster_380

Target Alias Description ECC score Gene Family Method Actions
Sopen07g008700 No alias Retrotransposon gag protein 0.03 Orthogroups_2024-Update
Sopen12g015060 No alias Retrotransposon gag protein 0.04 Orthogroups_2024-Update
Sopen12g023320 No alias Retrotransposon gag protein 0.03 Orthogroups_2024-Update
evm.model.contig_2390.1 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
evm.model.contig_2498.2 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
evm.model.contig_3711.2 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
evm.model.contig_3776.1 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
evm.model.contig_3777.1 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
evm.model.contig_4579.1 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
evm.model.contig_4586.1 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
evm.model.contig_4650.1 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 75 171
No external refs found!