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  5. Potri.016G063400

Potri.016G063400


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_42_0000146 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000146_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.016G063400
Cluster HCCA clusters: cluster_0027

Target Alias Description ECC score Gene Family Method Actions
402120 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
420704 No alias PENTATRICOPEPTIDE REPEAT 596 0.04 Orthogroups_2024-Update
Bradi1g49750 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g10850 No alias PENTATRICOPEPTIDE REPEAT 596 0.04 Orthogroups_2024-Update
Bradi2g11510 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.C02834.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.E02579.1 No alias RNA editing factor *(POCO) 0.04 Orthogroups_2024-Update
Brara.F01064.1 No alias RNA editing factor *(POCO) 0.06 Orthogroups_2024-Update
Glyma.02G000600 No alias PENTATRICOPEPTIDE REPEAT 596 0.03 Orthogroups_2024-Update
Glyma.02G011200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G027150.1 No alias splicing factor *(RTP7) 0.03 Orthogroups_2024-Update
HORVU7Hr1G011310.1 No alias Unknown function 0.05 Orthogroups_2024-Update
LOC_Os01g19490 No alias pentatricopeptide, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os12g34340 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
MA_7558g0010 No alias (at1g60770 : 392.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00009444-RA No alias (at1g60770 : 343.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
Seita.4G018800.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.002G078100.1 No alias RNA editing factor *(POCO) 0.02 Orthogroups_2024-Update
Sobic.003G144000.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.010G018900.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Solyc11g006380 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.05 Orthogroups_2024-Update
Solyc12g020050 No alias DNA-binding protein DQ117941 0.03 Orthogroups_2024-Update
Sopen11g002280 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen12g010730 No alias PPR repeat 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 152 181
IPR002885 Pentatricopeptide_repeat 187 216
IPR002885 Pentatricopeptide_repeat 363 389
IPR002885 Pentatricopeptide_repeat 396 421
IPR002885 Pentatricopeptide_repeat 258 283
No external refs found!