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  5. Potri.016G065500

Potri.016G065500


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.016G065500
Cluster HCCA clusters: cluster_0129

Target Alias Description ECC score Gene Family Method Actions
134463 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
412514 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
82859 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
90123 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
96227 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
AC216235.2_FG010 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
At1g31430 No alias Pentatricopeptide repeat-containing protein At1g31430... 0.02 Orthogroups_2024-Update
At3g02010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Orthogroups_2024-Update
At3g13880 No alias Pentatricopeptide repeat-containing protein At3g13880... 0.03 Orthogroups_2024-Update
Bradi1g01280 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g20737 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi1g36010 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi1g36900 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
Bradi2g22840 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi2g27440 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g48635 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g53140 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi2g53450 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi2g55230 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g37120 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g48960 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi4g20810 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi4g28137 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi4g33270 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G000674 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G019689 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G030148 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G161368 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G165521 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G474929 No alias mitochondrial editing factor 21 0.03 Orthogroups_2024-Update
Glyma.05G026400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G283000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.13G150300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.15G272100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
HORVU0Hr1G015970.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU2Hr1G063300.4 No alias RNA editing factor *(ELI1) 0.02 Orthogroups_2024-Update
HORVU3Hr1G061600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os05g30710 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
MA_50118g0010 No alias (at3g03580 : 671.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_77675g0010 No alias (at4g13650 : 598.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00001942-RA No alias (at3g57430 : 689.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
PSME_00005130-RA No alias (at4g33990 : 552.0) embryo defective 2758 (EMB2758);... 0.03 Orthogroups_2024-Update
PSME_00006107-RA No alias (at1g11290 : 668.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00010400-RA No alias (at4g02750 : 490.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00010401-RA No alias (at4g18750 : 645.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00014321-RA No alias (at2g13600 : 434.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00025245-RA No alias (at3g03580 : 656.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00031955-RA No alias (at1g11290 : 710.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00035796-RA No alias (at1g11290 : 732.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00036890-RA No alias (at1g11290 : 679.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00041541-RA No alias (at3g12770 : 598.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
Seita.1G237400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.1G334200.1 No alias RNA editing factor *(CLB19) 0.03 Orthogroups_2024-Update
Seita.3G224300.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.4G046900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.4G218400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.8G121200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G068200.1 No alias RNA editing factor *(DEK36) 0.04 Orthogroups_2024-Update
Seita.9G151300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G001200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G149100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G509700.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G200500.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G047400.1 No alias RNA editing factor *(OTP81) 0.03 Orthogroups_2024-Update
Sobic.003G333200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.003G337200.1 No alias RNA editing factor *(MEF10) 0.03 Orthogroups_2024-Update
Sobic.003G433600.1 No alias RNA editing factor *(OTP72) 0.04 Orthogroups_2024-Update
Sobic.004G217900.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G290400.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.007G137800.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.007G208400.1 No alias RNA editing factor *(REME1) 0.03 Orthogroups_2024-Update
Sobic.008G147400.2 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.009G116400.4 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.009G238700.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.010G190900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc01g006920 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc01g090510 No alias Pentatricopeptide repeat-containing protein, putative... 0.03 Orthogroups_2024-Update
Solyc01g100800 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update
Solyc01g112200 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc03g006990 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc03g007840 No alias Pentatricopeptide repeat-containing protein, putative... 0.03 Orthogroups_2024-Update
Solyc03g063690 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.05 Orthogroups_2024-Update
Solyc03g093630 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc03g097850 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc04g064750 No alias Pentatricopeptide repeat superfamily protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc07g042760 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc07g055310 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc09g009790 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.05 Orthogroups_2024-Update
Solyc10g008590 No alias Pentatricopeptide repeat-containing protein, putative... 0.03 Orthogroups_2024-Update
Solyc11g011860 No alias Pentatricopeptide repeat-containing protein family (AHRD... 0.03 Orthogroups_2024-Update
Solyc11g071370 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Sopen01g002910 No alias PPR repeat 0.06 Orthogroups_2024-Update
Sopen01g041280 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen01g054250 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen02g025050 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen02g033370 No alias PPR repeat family 0.05 Orthogroups_2024-Update
Sopen03g002990 No alias PPR repeat family 0.05 Orthogroups_2024-Update
Sopen03g028590 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen03g034780 No alias PPR repeat 0.04 Orthogroups_2024-Update
Sopen03g034990 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen06g022100 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen06g035950 No alias PPR repeat family 0.05 Orthogroups_2024-Update
Sopen09g004700 No alias PPR repeat 0.04 Orthogroups_2024-Update
Sopen09g031050 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen09g033130 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen11g001900 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen11g029050 No alias PPR repeat family 0.04 Orthogroups_2024-Update
evm.model.tig00001038.5 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 310 357
IPR032867 DYW_dom 484 607
IPR002885 Pentatricopeptide_repeat 211 241
IPR002885 Pentatricopeptide_repeat 384 409
IPR002885 Pentatricopeptide_repeat 284 307
IPR002885 Pentatricopeptide_repeat 180 209
IPR002885 Pentatricopeptide_repeat 80 109
IPR002885 Pentatricopeptide_repeat 454 479
No external refs found!