Potri.016G081700

Description : RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain

Gene families : OG_42_0002115 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002115_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Populus release: Potri.016G081700
Cluster	HCCA clusters: cluster_0156

Target	Alias	Description	ECC score	Gene Family Method
At2g37340	No alias	Serine/arginine-rich splicing factor RS2Z33...	0.04	Orthogroups_2024-Update
PSME_00033406-RA	No alias	no hits & (original description: no original description)	0.03	Orthogroups_2024-Update
Seita.7G272100.1	No alias	RNA splicing factor *(RSZ32/33)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001878	Znf_CCHC	100	115
IPR001878	Znf_CCHC	121	138
IPR000504	RRM_dom	13	74

External Links

No external refs found!