1. Home
  2. Species
  3. Populus trichocarpa
  4. Sequence
  5. Potri.016G090700

Potri.016G090700


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_42_0002384 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002384_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.016G090700
Cluster HCCA clusters: cluster_0036

Target Alias Description ECC score Gene Family Method Actions
Bradi1g20440 No alias chloroplast RNA-binding protein 29 0.04 Orthogroups_2024-Update
Bradi1g61250 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
GRMZM2G068715 No alias chloroplast RNA-binding protein 29 0.06 Orthogroups_2024-Update
GRMZM2G158835 No alias chloroplast RNA-binding protein 29 0.04 Orthogroups_2024-Update
Glyma.10G058500 No alias chloroplast RNA-binding protein 29 0.04 Orthogroups_2024-Update
Glyma.13G145200 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.07 Orthogroups_2024-Update
HORVU1Hr1G009390.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU3Hr1G083830.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU4Hr1G048440.1 No alias plastidial ribonucleoprotein *(CP29) 0.04 Orthogroups_2024-Update
Kfl00050_0340 kfl00050_0340_v1.1 (q08937|roc2_nicsy : 179.0) 29 kDa ribonucleoprotein B,... 0.03 Orthogroups_2024-Update
LOC_Os07g43810 No alias RNA recognition motif containing protein, putative, expressed 0.03 Orthogroups_2024-Update
Mp2g13800.1 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.02 Orthogroups_2024-Update
Mp3g24820.1 No alias RNA-binding protein CP31B, chloroplastic OS=Arabidopsis... 0.02 Orthogroups_2024-Update
Seita.2G401700.1 No alias plastidial ribonucleoprotein *(CP29) 0.03 Orthogroups_2024-Update
Seita.9G388600.1 No alias plastidial ribonucleoprotein *(CP29) 0.04 Orthogroups_2024-Update
Sobic.001G357200.1 No alias plastidial ribonucleoprotein *(CP29) 0.06 Orthogroups_2024-Update
Sobic.002G386400.1 No alias plastidial ribonucleoprotein *(CP29) 0.04 Orthogroups_2024-Update
Solyc09g007850 No alias RNA binding protein (AHRD V3.3 *** Q39209_ARATH) 0.03 Orthogroups_2024-Update
Solyc10g086150 No alias RNA-binding (RRM/RBD/RNP motifs) family protein (AHRD... 0.04 Orthogroups_2024-Update
Sopen09g002690 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.04 Orthogroups_2024-Update
Sopen10g035530 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000504 RRM_dom 191 255
IPR000504 RRM_dom 92 162
No external refs found!