1. Home
  2. Species
  3. Populus trichocarpa
  4. Sequence
  5. Potri.017G014700

Potri.017G014700


Description : nucleotide binding;protein binding


Gene families : OG_42_0006062 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006062_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.017G014700
Cluster HCCA clusters: cluster_0009

Target Alias Description ECC score Gene Family Method Actions
Brara.K00022.1 No alias SSU processome assembly factor *(SOF1) 0.06 Orthogroups_2024-Update
Cre07.g318702 No alias nucleotide binding;protein binding 0.03 Orthogroups_2024-Update
Sobic.001G007800.1 No alias SSU processome assembly factor *(SOF1) 0.05 Orthogroups_2024-Update
Solyc07g053660 No alias WD40 repeat-like protein (AHRD V3.3 *** I0Z366_COCSC) 0.04 Orthogroups_2024-Update
Sopen07g027630 No alias WD domain, G-beta repeat 0.02 Orthogroups_2024-Update
evm.model.contig_472.6 No alias (at4g28450 : 343.0) This gene is predicted to encode a... 0.05 Orthogroups_2024-Update
evm.model.tig00000615.67 No alias (at4g28450 : 462.0) This gene is predicted to encode a... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR013979 TIF_beta_prop-like 203 321
IPR001680 WD40_repeat 62 95
IPR001680 WD40_repeat 102 137
IPR001680 WD40_repeat 328 360
IPR007287 Sof1 361 447
No external refs found!