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  5. Potri.017G054700

Potri.017G054700


Description : Pectin lyase-like superfamily protein


Gene families : OG_42_0000087 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000087_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.017G054700
Cluster HCCA clusters: cluster_0105

Target Alias Description ECC score Gene Family Method Actions
Brara.F03103.1 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Brara.I00335.1 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Brara.J02514.1 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
GRMZM2G070913 No alias pectinesterase 11 0.03 Orthogroups_2024-Update
Glyma.01G006800 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.01G068100 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G035100 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.13G113700 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G097380.3 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
LOC_Os07g46190 No alias pectinesterase, putative, expressed 0.02 Orthogroups_2024-Update
MA_10428610g0010 No alias (at5g19730 : 471.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
PSME_00020050-RA No alias (at2g21610 : 321.0) pectinesterase 11 (PE11); FUNCTIONS... 0.03 Orthogroups_2024-Update
Pp1s23_141V6 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Solyc12g008530 No alias Pectinesterase (AHRD V3.3 *** K4DBU1_SOLLC) 0.03 Orthogroups_2024-Update
Sopen12g003480 No alias Pectinesterase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA InterProScan predictions
BP GO:0042545 cell wall modification IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 2 260
No external refs found!