Sopen12g029050

Description : SRF-type transcription factor (DNA-binding and dimerisation domain)

Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen12g029050
Cluster	HCCA clusters: Cluster_184

Target	Alias	Description	ECC score	Gene Family Method
A4A49_14436	No alias	agamous-like mads-box protein agl11	0.03	Orthogroups_2024-Update
A4A49_28929	No alias	agamous-like mads-box protein agl8	0.03	Orthogroups_2024-Update
At2g34440	No alias	AGL29 [Source:UniProtKB/TrEMBL;Acc:A0A178VU29]	0.02	Orthogroups_2024-Update
At3g57230	No alias	Agamous-like MADS-box protein AGL16...	0.03	Orthogroups_2024-Update
At4g37940	No alias	Agamous-like MADS-box protein AGL21...	0.03	Orthogroups_2024-Update
At5g20240	No alias	Floral homeotic protein PISTILLATA...	0.02	Orthogroups_2024-Update
Brara.C02304.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
Brara.F03360.1	No alias	regulatory protein *(SEPALLATA) of floral meristem...	0.03	Orthogroups_2024-Update
Brara.G01735.1	No alias	MADS/AGL-type transcription factor	0.04	Orthogroups_2024-Update
Brara.J02063.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Glyma.04G043800	No alias	AGAMOUS-like 66	0.03	Orthogroups_2024-Update
Glyma.14G027251	No alias	K-box region and MADS-box transcription factor family protein	0.04	Orthogroups_2024-Update
Glyma.16G200700	No alias	AGAMOUS-like 6	0.02	Orthogroups_2024-Update
Glyma.20G136600	No alias	AGAMOUS-like 62	0.03	Orthogroups_2024-Update
Glyma.20G136700	No alias	AGAMOUS-like 62	0.02	Orthogroups_2024-Update
Kfl00560_0030	kfl00560_0030_v1....	(q40872\|ag_pangi : 148.0) Floral homeotic protein...	0.04	Orthogroups_2024-Update
LOC_Os05g34940	No alias	OsMADS4 - MADS-box family gene with MIKCc type-box, expressed	0.02	Orthogroups_2024-Update
PSME_00013164-RA	No alias	(at4g11880 : 108.0) AGL12, AGL14, and AGL17 are all...	0.04	Orthogroups_2024-Update
Potri.002G062000	No alias	AGAMOUS-like 61	0.03	Orthogroups_2024-Update
Potri.002G151700	No alias	AGAMOUS-like 20	0.03	Orthogroups_2024-Update
Potri.010G154100	No alias	K-box region and MADS-box transcription factor family protein	0.02	Orthogroups_2024-Update
Seita.9G561000.1	No alias	MADS/AGL-type transcription factor	0.04	Orthogroups_2024-Update
Sobic.001G086500.1	No alias	regulatory protein *(AP1/CAL/FUL) of floral meristem...	0.03	Orthogroups_2024-Update
Sobic.001G455900.1	No alias	regulatory protein *(SEPALLATA) of floral meristem...	0.03	Orthogroups_2024-Update
Solyc01g093960	No alias	MADS-box transcription factor (AHRD V3.3 *** A0A072TNM9_MEDTR)	0.02	Orthogroups_2024-Update
Solyc01g106170	No alias	AGAMOUS-like MADS-box transcription factor (AHRD V3.3...	0.02	Orthogroups_2024-Update
Solyc02g089200	No alias	TM29	0.04	Orthogroups_2024-Update
Sopen01g049040	No alias	SRF-type transcription factor (DNA-binding and...	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	InterProScan predictions
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	86	171
IPR002100	TF_MADSbox	10	57

External Links

No external refs found!

Sopen12g029050

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation