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  5. Potri.017G078400

Potri.017G078400


Description : Pectate lyase family protein


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.017G078400
Cluster HCCA clusters: cluster_0133

Target Alias Description ECC score Gene Family Method Actions
A4A49_25976 No alias putative pectate lyase p59 0.03 Orthogroups_2024-Update
At3g24230 No alias Probable pectate lyase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRM5] 0.03 Orthogroups_2024-Update
Brara.A01481.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Brara.D00728.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Glyma.05G044000 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
PSME_00046555-RA No alias (at4g24780 : 518.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
Pp1s112_172V6 No alias pectate lyase 0.02 Orthogroups_2024-Update
Sobic.001G230400.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
Solyc02g093580 No alias Tomato 9612 mRNA 0.02 Orthogroups_2024-Update
Solyc03g058910 No alias Pectate lyase (AHRD V3.3 *** M1A3P9_SOLTU) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007524 Pec_lyase_N 25 111
IPR002022 Pec_lyase 211 391
No external refs found!