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  5. Sopen12g029410

Sopen12g029410


Description : DEAD/DEAH box helicase


Gene families : OG_42_0007585 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007585_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen12g029410
Cluster HCCA clusters: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
86079 No alias RH39 0.02 Orthogroups_2024-Update
Bradi2g05390 No alias RH39 0.07 Orthogroups_2024-Update
GRMZM2G175867 No alias RH39 0.02 Orthogroups_2024-Update
Potri.005G198300 No alias RH39 0.09 Orthogroups_2024-Update
Seita.5G131500.1 No alias 23S-rRNA maturation helicase *(RH39) 0.04 Orthogroups_2024-Update
Sobic.003G039300.1 No alias 23S-rRNA maturation helicase *(RH39) 0.06 Orthogroups_2024-Update
Solyc12g056740 No alias RNA helicase DEAD39 0.11 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 135 318
IPR001650 Helicase_C 354 465
No external refs found!