Potri.017G101200

Description : Alpha-L RNA-binding motif/Ribosomal protein S4 family protein

Gene families : OG_42_0004110 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004110_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Populus release: Potri.017G101200
Cluster	HCCA clusters: cluster_0009

Target	Alias	Description	ECC score	Gene Family Method
At5g15750	No alias	Alpha-L RNA-binding motif/Ribosomal protein S4 family...	0.03	Orthogroups_2024-Update
Brara.B00620.1	No alias	SSU processome assembly factor *(IMP3)	0.05	Orthogroups_2024-Update
HORVU2Hr1G110610.1	No alias	SSU processome assembly factor *(IMP3)	0.03	Orthogroups_2024-Update
Sobic.010G100000.1	No alias	SSU processome assembly factor *(IMP3)	0.02	Orthogroups_2024-Update
evm.model.tig00020510.74	No alias	(at5g15750 : 216.0) Alpha-L RNA-binding motif/Ribosomal...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
MF	GO:0019843	rRNA binding	IEA	InterProScan predictions
CC	GO:0044464	cell part	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001912	Ribosomal_S4/S9_N	3	62
IPR002942	S4_RNA-bd	107	152

External Links

No external refs found!