Sopen12g029850

Description : SRF-type transcription factor (DNA-binding and dimerisation domain)

Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen12g029850
Cluster	HCCA clusters: Cluster_241

Target	Alias	Description	ECC score	Gene Family Method
A4A49_23145	No alias	mads-box protein soc1	0.04	Orthogroups_2024-Update
LOC_Os03g03070	No alias	transcription factor, putative, expressed	0.02	Orthogroups_2024-Update
Pp1s34_373V6	No alias	mikc* mads-box transcription factor	0.02	Orthogroups_2024-Update
Seita.5G432700.1	No alias	MADS/AGL-type transcription factor	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	InterProScan predictions
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	10	57

External Links

No external refs found!