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  5. Sopen12g030080

Sopen12g030080


Description : Rhamnogalacturonate lyase family


Gene families : OG_42_0000589 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000589_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen12g030080
Cluster HCCA clusters: Cluster_162

Target Alias Description ECC score Gene Family Method Actions
A4A49_02685 No alias hypothetical protein 0.02 Orthogroups_2024-Update
At1g09890 No alias Rhamnogalacturonate lyase family protein... 0.04 Orthogroups_2024-Update
Brara.I04573.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc04g014430 No alias Rhamnogalacturonate lyase family protein (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Sopen11g006060 No alias Rhamnogalacturonate lyase family 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR010325 Rhamnogal_lyase 191 398
IPR029413 RG-lyase_II 554 624
IPR029411 RG-lyase_III 638 825
No external refs found!