1. Home
  2. Species
  3. Populus trichocarpa
  4. Sequence
  5. Potri.018G021100

Potri.018G021100


Description : chromatin remodeling factor CHD3 (PICKLE)


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.018G021100
Cluster HCCA clusters: cluster_0103

Target Alias Description ECC score Gene Family Method Actions
130534 No alias chromatin remodeling 4 0.03 Orthogroups_2024-Update
At4g31900 No alias CHD3-type chromatin-remodeling factor CHR7... 0.02 Orthogroups_2024-Update
Brara.A03548.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os05g05230 No alias expressed protein 0.04 Orthogroups_2024-Update
PSME_00000429-RA No alias (at2g28290 : 480.0) Encodes a SWI2/SNF2-like protein in... 0.04 Orthogroups_2024-Update
Potri.010G021400 No alias chromatin-remodeling protein 11 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR009463 DUF1087 850 911
IPR023780 Chromo_domain 201 248
IPR023780 Chromo_domain 129 164
IPR000330 SNF2_N 313 591
IPR019787 Znf_PHD-finger 62 104
IPR001650 Helicase_C 615 728
IPR009462 DUF1086 947 1079
No external refs found!