Sopen12g031330

Description : ARID/BRIGHT DNA binding domain

Gene families : OG_42_0001716 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001716_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen12g031330
Cluster	HCCA clusters: Cluster_353

Target	Alias	Description	ECC score	Gene Family Method
Glyma.04G020000	No alias	HMG (high mobility group) box protein with ARID/BRIGHT...	0.05	Orthogroups_2024-Update
Glyma.04G113000	No alias	HMG (high mobility group) box protein with ARID/BRIGHT...	0.02	Orthogroups_2024-Update
Solyc12g094440	No alias	High mobility group family (AHRD V3.3 *** E5GCD0_CUCME)	0.07	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001606	ARID_dom	18	100
IPR009071	HMG_box_dom	193	260

External Links

No external refs found!