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  5. Sopen12g031890

Sopen12g031890


Description : DEAD/DEAH box helicase


Gene families : OG_42_0000623 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000623_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen12g031890
Cluster HCCA clusters: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
143895 No alias eukaryotic translation initiation factor 4A1 0.09 Orthogroups_2024-Update
At1g54270 No alias eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1] 0.02 Orthogroups_2024-Update
At1g72730 No alias Eukaryotic initiation factor 4A-3... 0.03 Orthogroups_2024-Update
Bradi3g60590 No alias eukaryotic initiation factor 4A-III 0.02 Orthogroups_2024-Update
Brara.A03225.1 No alias mRNA unwinding factor *(eIF4A)) 0.04 Orthogroups_2024-Update
Brara.C03500.1 No alias mRNA unwinding factor *(eIF4A)) 0.03 Orthogroups_2024-Update
Brara.E02231.1 No alias helicase component *(eIF4A3) of RNA quality control Exon... 0.07 Orthogroups_2024-Update
Glyma.09G065600 No alias eukaryotic translation initiation factor 4A1 0.03 Orthogroups_2024-Update
Glyma.13G106200 No alias eukaryotic translation initiation factor 4A1 0.03 Orthogroups_2024-Update
Glyma.15G026100 No alias eif4a-2 0.02 Orthogroups_2024-Update
Glyma.15G171800 No alias eukaryotic translation initiation factor 4A1 0.02 Orthogroups_2024-Update
Mp2g02760.1 No alias mRNA unwinding factor (eIF4A) 0.04 Orthogroups_2024-Update
Seita.1G089900.1 No alias mRNA unwinding factor *(eIF4A)) 0.03 Orthogroups_2024-Update
Seita.4G242200.1 No alias mRNA unwinding factor *(eIF4A)) 0.07 Orthogroups_2024-Update
Sobic.004G039400.2 No alias mRNA unwinding factor *(eIF4A)) 0.04 Orthogroups_2024-Update
Sobic.004G356900.1 No alias helicase component *(eIF4A3) of RNA quality control Exon... 0.03 Orthogroups_2024-Update
Solyc08g062800 No alias RNA helicase DEAD26 0.07 Orthogroups_2024-Update
evm.model.tig00001339.22 No alias (at3g19760 : 627.0) Encodes an RNA helicase that may be... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 62 223
IPR001650 Helicase_C 263 371
No external refs found!