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  5. Sopen12g033730

Sopen12g033730


Description : PPR repeat family


Gene families : OG_42_0001418 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001418_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Solanum release: Sopen12g033730
Cluster HCCA clusters: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
Bradi1g77530 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi4g26900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G071162 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.17G034600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.17G039500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
HORVU7Hr1G027800.8 No alias Unknown function 0.02 Orthogroups_2024-Update
Kfl00009_0560 kfl00009_0560_v1.1 (at5g02860 : 187.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
Potri.002G243600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.010G153900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 Orthogroups_2024-Update
Seita.2G009700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G568800.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.001G532900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.002G013700.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Solyc12g098990 No alias Pentatricopeptide repeat-containing protein, putative... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 225 286
IPR002885 Pentatricopeptide_repeat 134 163
IPR002885 Pentatricopeptide_repeat 307 354
IPR002885 Pentatricopeptide_repeat 416 459
IPR002885 Pentatricopeptide_repeat 170 214
No external refs found!