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  5. Sopen12g034380

Sopen12g034380


Description : Regulator of chromosome condensation (RCC1) repeat


Gene families : OG_42_0000452 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000452_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen12g034380
Cluster HCCA clusters: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
A4A49_35982 No alias ultraviolet-b receptor uvr8 0.03 Orthogroups_2024-Update
A4A49_39411 No alias ultraviolet-b receptor uvr8 0.02 Orthogroups_2024-Update
Bradi2g26807 No alias Regulator of chromosome condensation (RCC1) family with... 0.03 Orthogroups_2024-Update
Bradi3g51950 No alias Regulator of chromosome condensation (RCC1) family with... 0.03 Orthogroups_2024-Update
Bradi5g19367 No alias Regulator of chromosome condensation (RCC1) family with... 0.04 Orthogroups_2024-Update
Brara.F01931.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G174949 No alias Regulator of chromosome condensation (RCC1) family protein 0.03 Orthogroups_2024-Update
GRMZM2G319130 No alias Regulator of chromosome condensation (RCC1) family with... 0.03 Orthogroups_2024-Update
HORVU1Hr1G056870.1 No alias Unknown function 0.05 Orthogroups_2024-Update
PSME_00003947-RA No alias (at5g19420 : 205.0) Regulator of chromosome condensation... 0.02 Orthogroups_2024-Update
Sobic.003G269400.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G279400.2 No alias Unknown function 0.01 Orthogroups_2024-Update
Sobic.006G191900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc02g081250 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000408 Reg_chr_condens 605 652
IPR000408 Reg_chr_condens 551 600
IPR000408 Reg_chr_condens 436 484
IPR000408 Reg_chr_condens 499 548
IPR000408 Reg_chr_condens 331 379
IPR000408 Reg_chr_condens 382 432
IPR001849 PH_domain 23 129
IPR027988 BRX_N 917 951
IPR013591 Brevis_radix_dom 1033 1088
IPR000306 Znf_FYVE 656 722
No external refs found!