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  5. Sopen12g034480

Sopen12g034480


Description : PPR repeat


Gene families : OG_42_0010620 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0010620_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen12g034480
Cluster HCCA clusters: Cluster_162

Target Alias Description ECC score Gene Family Method Actions
Bradi4g39360 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.07G234800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.009G067000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Sobic.009G211100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc12g099850 No alias Pentatricopeptide repeat superfamily protein (AHRD V3.3... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 173 199
IPR002885 Pentatricopeptide_repeat 201 227
IPR002885 Pentatricopeptide_repeat 640 670
IPR002885 Pentatricopeptide_repeat 577 603
IPR002885 Pentatricopeptide_repeat 303 332
IPR002885 Pentatricopeptide_repeat 275 301
IPR002885 Pentatricopeptide_repeat 504 530
IPR002885 Pentatricopeptide_repeat 376 403
IPR002885 Pentatricopeptide_repeat 606 635
IPR002885 Pentatricopeptide_repeat 746 771
IPR002885 Pentatricopeptide_repeat 404 432
No external refs found!