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  5. Sopen12g034500

Sopen12g034500


Description : Leucine Rich repeats (2 copies)


Gene families : OG_42_0000110 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000110_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen12g034500
Cluster HCCA clusters: Cluster_200

Target Alias Description ECC score Gene Family Method Actions
Sobic.003G059300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc01g009690 No alias BnaC05g27570D protein (AHRD V3.3 --* A0A078CAX2_BRANA) 0.03 Orthogroups_2024-Update
Solyc12g009690 No alias LOW QUALITY:Leucine-rich repeat receptor-like protein... 0.03 Orthogroups_2024-Update
Solyc12g013680 No alias Leucine-rich repeat receptor-like protein kinase family... 0.03 Orthogroups_2024-Update
Solyc12g040740 No alias Leucine-rich repeat receptor-like protein kinase family... 0.03 Orthogroups_2024-Update
Solyc12g099980 No alias Leucine-rich repeat receptor-like protein kinase family... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 311 332
IPR001611 Leu-rich_rpt 353 374
IPR001611 Leu-rich_rpt 96 114
IPR001611 Leu-rich_rpt 214 274
IPR001611 Leu-rich_rpt 517 575
IPR013210 LRR_N_plant-typ 28 66
No external refs found!