Sopen12g034610

Description : EF hand

Gene families : OG_42_0000315 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000315_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen12g034610
Cluster	HCCA clusters: Cluster_363

Target	Alias	Description	ECC score	Gene Family Method
GRMZM2G067511	No alias	calmodulin 5	0.03	Orthogroups_2024-Update
GRMZM2G146720	No alias	calmodulin 5	0.02	Orthogroups_2024-Update
GRMZM2G152891	No alias	calmodulin 5	0.02	Orthogroups_2024-Update
GRMZM2G395244	No alias	calmodulin 5	0.02	Orthogroups_2024-Update
MA_52889g0010	No alias	(at5g37780 : 246.0) encodes a calmodulin that is...	0.02	Orthogroups_2024-Update
Seita.3G380800.1	No alias	calcium sensor *(CML)	0.03	Orthogroups_2024-Update
Sopen10g028690	No alias	EF hand	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005509	calcium ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002048	EF_hand_dom	83	146
IPR002048	EF_hand_dom	12	73

External Links

No external refs found!