1. Home
  2. Species
  3. Solanum pennellii
  4. Sequence
  5. Sopen12g034810

Sopen12g034810


Description : ABC-2 type transporter


Gene families : OG_42_0000055 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000055_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen12g034810
Cluster HCCA clusters: Cluster_62

Target Alias Description ECC score Gene Family Method Actions
441717 No alias pleiotropic drug resistance 12 0.03 Orthogroups_2024-Update
441722 No alias pleiotropic drug resistance 12 0.02 Orthogroups_2024-Update
A4A49_10347 No alias pleiotropic drug resistance protein 1 0.04 Orthogroups_2024-Update
A4A49_31699 No alias pleiotropic drug resistance protein 2 0.03 Orthogroups_2024-Update
At1g15520 No alias ABC transporter G family member 40... 0.08 Orthogroups_2024-Update
At4g15230 No alias ABC transporter G family member 30... 0.04 Orthogroups_2024-Update
Bradi1g26040 No alias pleiotropic drug resistance 6 0.02 Orthogroups_2024-Update
Bradi2g10110 No alias pleiotropic drug resistance 12 0.02 Orthogroups_2024-Update
Bradi4g28270 No alias pleiotropic drug resistance 12 0.02 Orthogroups_2024-Update
Brara.D01603.1 No alias cuticular lipid exporter *(PEC1) & subfamily ABCG transporter 0.03 Orthogroups_2024-Update
Cre16.g655450 No alias pleiotropic drug resistance 3 0.02 Orthogroups_2024-Update
GRMZM2G118243 No alias pleiotropic drug resistance 4 0.03 Orthogroups_2024-Update
GRMZM2G143139 No alias pleiotropic drug resistance 12 0.02 Orthogroups_2024-Update
Glyma.03G168000 No alias pleiotropic drug resistance 12 0.03 Orthogroups_2024-Update
Glyma.05G011900 No alias pleiotropic drug resistance 4 0.04 Orthogroups_2024-Update
Glyma.14G127800 No alias pleiotropic drug resistance 12 0.03 Orthogroups_2024-Update
Glyma.15G011900 No alias pleiotropic drug resistance 12 0.04 Orthogroups_2024-Update
Glyma.19G169400 No alias pleiotropic drug resistance 12 0.04 Orthogroups_2024-Update
Glyma.20G187400 No alias pleiotropic drug resistance 11 0.03 Orthogroups_2024-Update
HORVU3Hr1G053350.8 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
LOC_Os08g29570 No alias pleiotropic drug resistance protein 3, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g32820 No alias pleiotropic drug resistance protein 3, putative, expressed 0.03 Orthogroups_2024-Update
MA_10425791g0020 No alias (q8gu88|pdr7_orysa : 1086.0) Putative pleiotropic drug... 0.03 Orthogroups_2024-Update
MA_12965g0010 No alias (q949g3|pdr1_nicpl : 544.0) Pleiotropic drug resistance... 0.03 Orthogroups_2024-Update
PSME_00000647-RA No alias (at1g59870 : 1668.0) ATP binding cassette transporter.... 0.03 Orthogroups_2024-Update
PSME_00000867-RA No alias (q8gu92|pdr2_orysa : 1758.0) Probable pleiotropic drug... 0.02 Orthogroups_2024-Update
PSME_00002220-RA No alias (q5z9s8|pdr12_orysa : 1203.0) Pleiotropic drug... 0.02 Orthogroups_2024-Update
PSME_00008988-RA No alias (q5z9s8|pdr12_orysa : 1221.0) Pleiotropic drug... 0.02 Orthogroups_2024-Update
PSME_00014724-RA No alias (q76cu2|pdr1_tobac : 1860.0) Pleiotropic drug resistance... 0.03 Orthogroups_2024-Update
PSME_00015395-RA No alias (q76cu2|pdr1_tobac : 1904.0) Pleiotropic drug resistance... 0.02 Orthogroups_2024-Update
PSME_00019551-RA No alias (q76cu2|pdr1_tobac : 1217.0) Pleiotropic drug resistance... 0.03 Orthogroups_2024-Update
Potri.015G006000 No alias pleiotropic drug resistance 9 0.04 Orthogroups_2024-Update
Seita.5G221700.1 No alias subfamily ABCG transporter 0.04 Orthogroups_2024-Update
Sobic.003G215800.1 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
Sobic.003G216166.1 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
Sobic.003G216232.1 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
Solyc08g067620 No alias Pleiotropic drug resistance ABC transporter (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc12g100180 No alias Pleiotropic drug resistance ABC transporter (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc12g100190 No alias Pleiotropic drug resistance ABC transporter (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen09g034570 No alias ABC-2 type transporter 0.04 Orthogroups_2024-Update
evm.model.tig00000057.108 No alias (at3g16340 : 255.0) pleiotropic drug resistance 1... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
MF GO:0016887 ATPase activity IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR013525 ABC_2_trans 1146 1360
IPR013525 ABC_2_trans 520 732
IPR013581 PDR_assoc 737 800
IPR029481 ABC_trans_N 89 159
IPR003439 ABC_transporter-like 184 366
IPR003439 ABC_transporter-like 865 1001
No external refs found!