Sopen12g034820

Description : ABC-2 type transporter

Gene families : OG_42_0000055 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000055_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen12g034820
Cluster	HCCA clusters: Cluster_394

Target	Alias	Description	ECC score	Gene Family Method
At1g15210	No alias	PDR7 [Source:UniProtKB/TrEMBL;Acc:A0A178WAD4]	0.04	Orthogroups_2024-Update
Glyma.14G127800	No alias	pleiotropic drug resistance 12	0.02	Orthogroups_2024-Update
LOC_Os02g21340	No alias	ABC-2 type transporter family protein, expressed	0.02	Orthogroups_2024-Update
LOC_Os02g32690	No alias	pleiotropic drug resistance protein 15, putative, expressed	0.03	Orthogroups_2024-Update
MA_135152g0010	No alias	(q5z9s8\|pdr12_orysa : 1938.0) Pleiotropic drug...	0.03	Orthogroups_2024-Update
PSME_00012292-RA	No alias	(at2g29940 : 1536.0) pleiotropic drug resistance 3...	0.02	Orthogroups_2024-Update
PSME_00014724-RA	No alias	(q76cu2\|pdr1_tobac : 1860.0) Pleiotropic drug resistance...	0.02	Orthogroups_2024-Update
Potri.002G189100	No alias	pleiotropic drug resistance 9	0.03	Orthogroups_2024-Update
Solyc11g007280	No alias	Pleiotropic drug resistance ABC transporter (AHRD V3.3...	0.03	Orthogroups_2024-Update
Solyc12g100190	No alias	Pleiotropic drug resistance ABC transporter (AHRD V3.3...	0.03	Orthogroups_2024-Update
Sopen03g039810	No alias	ABC-2 type transporter	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0008144	drug binding	None	Extended
CC	GO:0016020	membrane	IEA	InterProScan predictions
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	IEA	InterProScan predictions
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR013581	PDR_assoc	699	762
IPR013525	ABC_2_trans	1108	1300
IPR013525	ABC_2_trans	482	694
IPR029481	ABC_trans_N	108	159
IPR003439	ABC_transporter-like	184	329
IPR003439	ABC_transporter-like	829	979

External Links

No external refs found!