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  5. At1g05890

At1g05890


Description : RBR-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F4IAE4]


Gene families : OG_42_0000347 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000347_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At1g05890
Cluster HCCA clusters: Cluster_238

Target Alias Description ECC score Gene Family Method Actions
A4A49_29230 No alias putative e3 ubiquitin-protein ligase ari8 0.02 Orthogroups_2024-Update
Brara.A00383.1 No alias RBR-Ariadne-class E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.H02982.1 No alias RBR-Ariadne-class E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Potri.007G126900 No alias IBR domain-containing protein 0.03 Orthogroups_2024-Update
Potri.017G032000 No alias IBR domain-containing protein 0.03 Orthogroups_2024-Update
Sopen01g018270 No alias IBR domain 0.02 Orthogroups_2024-Update
evm.model.tig00020556.44 No alias (at3g27710 : 223.0) ARIADNE 3 (ARI3); FUNCTIONS IN: zinc... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003997 acyl-CoA oxidase activity IEP Predicted GO
CC GO:0005777 peroxisome IEP Predicted GO
BP GO:0006631 fatty acid metabolic process IEP Predicted GO
BP GO:0006635 fatty acid beta-oxidation IEP Predicted GO
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Predicted GO
CC GO:0008290 F-actin capping protein complex IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
BP GO:0009062 fatty acid catabolic process IEP Predicted GO
BP GO:0010639 negative regulation of organelle organization IEP Predicted GO
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Predicted GO
BP GO:0015693 magnesium ion transport IEP Predicted GO
BP GO:0016042 lipid catabolic process IEP Predicted GO
BP GO:0016255 attachment of GPI anchor to protein IEP Predicted GO
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
BP GO:0019395 fatty acid oxidation IEP Predicted GO
BP GO:0030832 regulation of actin filament length IEP Predicted GO
BP GO:0030833 regulation of actin filament polymerization IEP Predicted GO
BP GO:0030834 regulation of actin filament depolymerization IEP Predicted GO
BP GO:0030835 negative regulation of actin filament depolymerization IEP Predicted GO
BP GO:0030837 negative regulation of actin filament polymerization IEP Predicted GO
BP GO:0031333 negative regulation of protein complex assembly IEP Predicted GO
BP GO:0032271 regulation of protein polymerization IEP Predicted GO
BP GO:0032272 negative regulation of protein polymerization IEP Predicted GO
BP GO:0032535 regulation of cellular component size IEP Predicted GO
BP GO:0032956 regulation of actin cytoskeleton organization IEP Predicted GO
BP GO:0032970 regulation of actin filament-based process IEP Predicted GO
BP GO:0034440 lipid oxidation IEP Predicted GO
CC GO:0042579 microbody IEP Predicted GO
CC GO:0042765 GPI-anchor transamidase complex IEP Predicted GO
BP GO:0043242 negative regulation of protein complex disassembly IEP Predicted GO
BP GO:0043244 regulation of protein complex disassembly IEP Predicted GO
BP GO:0043254 regulation of protein complex assembly IEP Predicted GO
BP GO:0044087 regulation of cellular component biogenesis IEP Predicted GO
BP GO:0044242 cellular lipid catabolic process IEP Predicted GO
BP GO:0051016 barbed-end actin filament capping IEP Predicted GO
BP GO:0051129 negative regulation of cellular component organization IEP Predicted GO
BP GO:0051493 regulation of cytoskeleton organization IEP Predicted GO
BP GO:0051494 negative regulation of cytoskeleton organization IEP Predicted GO
BP GO:0051693 actin filament capping IEP Predicted GO
BP GO:0070838 divalent metal ion transport IEP Predicted GO
BP GO:0072329 monocarboxylic acid catabolic process IEP Predicted GO
BP GO:0072511 divalent inorganic cation transport IEP Predicted GO
BP GO:0090066 regulation of anatomical structure size IEP Predicted GO
BP GO:0110053 regulation of actin filament organization IEP Predicted GO
BP GO:1901879 regulation of protein depolymerization IEP Predicted GO
BP GO:1901880 negative regulation of protein depolymerization IEP Predicted GO
BP GO:1902903 regulation of supramolecular fiber organization IEP Predicted GO
BP GO:1902904 negative regulation of supramolecular fiber organization IEP Predicted GO
InterPro domains Description Start Stop
IPR002867 IBR_dom 201 263
IPR002867 IBR_dom 280 328
No external refs found!