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At1g06580


Description : Pentatricopeptide repeat-containing protein At1g06580 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHK2]


Gene families : OG_42_0000374 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000374_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At1g06580
Cluster HCCA clusters: Cluster_234

Target Alias Description ECC score Gene Family Method Actions
A4A49_33758 No alias putative pentatricopeptide repeat-containing protein,... 0.03 Orthogroups_2024-Update
Brara.I05207.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.16G162100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Solyc06g007740 No alias Pentatricopeptide repeat protein (AHRD V3.3 *** A0A1B3IPW0_CAPAN) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 248 280
IPR002885 Pentatricopeptide_repeat 358 406
IPR002885 Pentatricopeptide_repeat 287 336
IPR002885 Pentatricopeptide_repeat 113 161
IPR002885 Pentatricopeptide_repeat 182 229
IPR002885 Pentatricopeptide_repeat 429 474
No external refs found!