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  5. At1g07090

At1g07090


Description : LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]


Gene families : OG_42_0000294 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000294_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At1g07090
Cluster HCCA clusters: Cluster_161

Target Alias Description ECC score Gene Family Method Actions
At5g58500 No alias LSH5 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N9] 0.03 Orthogroups_2024-Update
Brara.F02899.1 No alias plant-specific ALOG-type transcription factor 0.03 Orthogroups_2024-Update
Brara.J00489.1 No alias plant-specific ALOG-type transcription factor 0.03 Orthogroups_2024-Update
GRMZM2G147241 No alias Protein of unknown function (DUF640) 0.02 Orthogroups_2024-Update
Glyma.19G165300 No alias Protein of unknown function (DUF640) 0.03 Orthogroups_2024-Update
Potri.008G167700 No alias Protein of unknown function (DUF640) 0.04 Orthogroups_2024-Update
Seita.3G208400.1 No alias plant-specific ALOG-type transcription factor 0.05 Orthogroups_2024-Update
Sobic.005G094266.1 No alias plant-specific ALOG-type transcription factor 0.02 Orthogroups_2024-Update
Solyc05g055020 No alias LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)... 0.02 Orthogroups_2024-Update
Sopen10g003120 No alias Protein of unknown function (DUF640) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001101 response to acid chemical IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006605 protein targeting IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006897 endocytosis IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
BP GO:0010035 response to inorganic substance IEP Predicted GO
BP GO:0010167 response to nitrate IEP Predicted GO
BP GO:0015706 nitrate transport IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
BP GO:0098657 import into cell IEP Predicted GO
BP GO:1901698 response to nitrogen compound IEP Predicted GO
BP GO:1901700 response to oxygen-containing compound IEP Predicted GO
InterPro domains Description Start Stop
IPR006936 ALOG_dom 24 144
No external refs found!