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  5. At1g08620

At1g08620


Description : Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein [Source:TAIR;Acc:AT1G08620]


Gene families : OG_42_0001408 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001408_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At1g08620
Cluster HCCA clusters: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
HORVU1Hr1G093770.7 No alias histone demethylase *(PKDM7) 0.03 Orthogroups_2024-Update
Sopen06g003260 No alias JmjC domain, hydroxylase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Predicted GO
CC GO:0000428 DNA-directed RNA polymerase complex IEP Predicted GO
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003852 2-isopropylmalate synthase activity IEP Predicted GO
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
MF GO:0004358 glutamate N-acetyltransferase activity IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005665 RNA polymerase II, core complex IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006366 transcription by RNA polymerase II IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0006525 arginine metabolic process IEP Predicted GO
BP GO:0006526 arginine biosynthetic process IEP Predicted GO
BP GO:0006551 leucine metabolic process IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006906 vesicle fusion IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009081 branched-chain amino acid metabolic process IEP Predicted GO
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
BP GO:0009098 leucine biosynthetic process IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016050 vesicle organization IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
MF GO:0019829 cation-transporting ATPase activity IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
MF GO:0022853 active ion transmembrane transporter activity IEP Predicted GO
CC GO:0030118 clathrin coat IEP Predicted GO
CC GO:0030125 clathrin vesicle coat IEP Predicted GO
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Predicted GO
CC GO:0030132 clathrin coat of coated pit IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Predicted GO
BP GO:0048280 vesicle fusion with Golgi apparatus IEP Predicted GO
BP GO:0048284 organelle fusion IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Predicted GO
BP GO:0061024 membrane organization IEP Predicted GO
BP GO:0061025 membrane fusion IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:0090174 organelle membrane fusion IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
BP GO:1901607 alpha-amino acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR003888 FYrich_N 988 1029
IPR004198 Znf_C5HC2 617 667
IPR003349 JmjN 147 180
IPR003889 FYrich_C 1037 1120
IPR003347 JmjC_dom 394 510
No external refs found!