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  5. AC233949.1_FG004

AC233949.1_FG004


Description : ATPase, AAA-type, CDC48 protein


Gene families : OG_42_0000328 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000328_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: AC233949.1_FG004
Cluster HCCA clusters: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
Cre06.g269950 No alias ATPase, AAA-type, CDC48 protein 0.02 Orthogroups_2024-Update
Glyma.12G177100 No alias ATPase, AAA-type, CDC48 protein 0.03 Orthogroups_2024-Update
LOC_Os10g30580 No alias cell division control protein 48 homolog E, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00027195-RA No alias (at5g03340 : 508.0) ATPase, AAA-type, CDC48 protein;... 0.02 Orthogroups_2024-Update
Seita.9G239600.1 No alias platform ATPase CDC48 0.03 Orthogroups_2024-Update
Seita.9G537700.1 No alias platform ATPase CDC48 0.02 Orthogroups_2024-Update
Solyc06g074980 No alias cell division cycle 48 (AHRD V3.3 *** AT3G09840.1) 0.03 Orthogroups_2024-Update
Sopen06g031380 No alias ATPase family associated with various cellular activities (AAA) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
CC GO:0000502 proteasome complex IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
BP GO:0006488 dolichol-linked oligosaccharide biosynthetic process IEP Predicted GO
BP GO:0006490 oligosaccharide-lipid intermediate biosynthetic process IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
BP GO:0009894 regulation of catabolic process IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
BP GO:0042176 regulation of protein catabolic process IEP Predicted GO
BP GO:0042592 homeostatic process IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
MF GO:0046422 violaxanthin de-epoxidase activity IEP Predicted GO
CC GO:1905368 peptidase complex IEP Predicted GO
CC GO:1905369 endopeptidase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR003338 CDC4_N-term_subdom 33 114
IPR004201 Cdc48_dom2 134 197
IPR003959 ATPase_AAA_core 521 654
IPR003959 ATPase_AAA_core 248 377
No external refs found!