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  5. At1g09890

At1g09890


Description : Rhamnogalacturonate lyase family protein [Source:TAIR;Acc:AT1G09890]


Gene families : OG_42_0000589 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000589_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At1g09890
Cluster HCCA clusters: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
At1g65210 No alias Galactose-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9S9K1] 0.04 Orthogroups_2024-Update
Brara.F00648.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Glyma.06G092900 No alias Rhamnogalacturonate lyase family protein 0.04 Orthogroups_2024-Update
PSME_00001722-RA No alias (at1g09910 : 793.0) Rhamnogalacturonate lyase family... 0.02 Orthogroups_2024-Update
Solyc04g014430 No alias Rhamnogalacturonate lyase family protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc11g011280 No alias Rhamnogalacturonate lyase family protein (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update
Solyc12g088050 No alias Rhamnogalacturonate lyase family protein (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Sopen04g030380 No alias Rhamnogalacturonate lyase family 0.03 Orthogroups_2024-Update
Sopen12g030080 No alias Rhamnogalacturonate lyase family 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004743 pyruvate kinase activity IEP Predicted GO
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0010109 regulation of photosynthesis IEP Predicted GO
BP GO:0010207 photosystem II assembly IEP Predicted GO
MF GO:0010242 oxygen evolving activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
MF GO:0030955 potassium ion binding IEP Predicted GO
MF GO:0031420 alkali metal ion binding IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
BP GO:0042548 regulation of photosynthesis, light reaction IEP Predicted GO
BP GO:0042549 photosystem II stabilization IEP Predicted GO
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR029413 RG-lyase_II 342 411
IPR010325 Rhamnogal_lyase 1 184
IPR029411 RG-lyase_III 426 612
No external refs found!