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  5. GRMZM2G000371

GRMZM2G000371


Description : RNA helicase family protein


Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G000371
Cluster HCCA clusters: Cluster_200

Target Alias Description ECC score Gene Family Method Actions
Bradi1g64190 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Bradi4g16730 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Glyma.02G119000 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Glyma.13G342400 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
HORVU4Hr1G052730.3 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex 0.03 Orthogroups_2024-Update
HORVU4Hr1G088270.14 No alias RNA helicase *(Prp2) 0.03 Orthogroups_2024-Update
Seita.4G158300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
evm.model.contig_2036.4 No alias (at5g13010 : 784.0) embryo defective 3011 (EMB3011);... 0.01 Orthogroups_2024-Update
evm.model.contig_618.2 No alias (at3g26560 : 1023.0) ATP-dependent RNA helicase,... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0003839 gamma-glutamylcyclotransferase activity IEP Predicted GO
MF GO:0005319 lipid transporter activity IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
BP GO:0006749 glutathione metabolic process IEP Predicted GO
BP GO:0006751 glutathione catabolic process IEP Predicted GO
BP GO:0006869 lipid transport IEP Predicted GO
MF GO:0016842 amidine-lyase activity IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030008 TRAPP complex IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
BP GO:0042219 cellular modified amino acid catabolic process IEP Predicted GO
BP GO:0043171 peptide catabolic process IEP Predicted GO
BP GO:0044273 sulfur compound catabolic process IEP Predicted GO
BP GO:0051187 cofactor catabolic process IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
BP GO:0061024 membrane organization IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
BP GO:0120009 intermembrane lipid transfer IEP Predicted GO
MF GO:0120013 intermembrane lipid transfer activity IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
MF GO:1901567 fatty acid derivative binding IEP Predicted GO
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 89 161
IPR011709 DUF1605 245 326
No external refs found!