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  5. GRMZM2G003514

GRMZM2G003514


Description : AGAMOUS-like 6


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G003514
Cluster HCCA clusters: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
A4A49_15806 No alias developmental protein sepallata 1 0.02 Orthogroups_2024-Update
At3g66656 No alias AGAMOUS-like 91 [Source:UniProtKB/TrEMBL;Acc:Q9C836] 0.02 Orthogroups_2024-Update
Glyma.05G163200 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Glyma.08G310100 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
LOC_Os08g41950 No alias OsMADS7 - MADS-box family gene with MIKCc type-box, expressed 0.02 Orthogroups_2024-Update
Pp1s209_130V6 No alias mads-box transcription factor 0.03 Orthogroups_2024-Update
Seita.2G002300.1 No alias regulatory protein *(AP1/CAL/FUL) of floral meristem... 0.03 Orthogroups_2024-Update
Seita.6G156800.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Seita.6G223400.1 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.04 Orthogroups_2024-Update
Sobic.001G314400.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Solyc02g071730 No alias Tomato AGAMOUS 1 0.04 Orthogroups_2024-Update
Solyc04g078300 No alias MADS-box transcription factor family protein (AHRD V3.3... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002487 TF_Kbox 86 171
IPR002100 TF_MADSbox 10 57
No external refs found!