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GRMZM2G004500


Description : Pectin lyase-like superfamily protein


Gene families : OG_42_0000306 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000306_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G004500
Cluster HCCA clusters: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Brara.C03237.1 No alias polygalacturonase *(QRT2) & EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Brara.C03581.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Brara.G00978.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
LOC_Os03g59330 No alias polygalacturonase, putative, expressed 0.02 Orthogroups_2024-Update
MA_63122g0010 No alias (at1g23460 : 261.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
MA_96282g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00023336-RA No alias (at1g80170 : 252.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00025694-RA No alias (at1g80170 : 422.0) Pectin lyase-like superfamily... 0.06 Orthogroups_2024-Update
Potri.016G054800 No alias polygalacturonase abscission zone A. thaliana 0.03 Orthogroups_2024-Update
Sobic.001G045400.1 No alias polygalacturonase *(QRT2) & EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
Sobic.004G028700.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Sopen08g016250 No alias Glycosyl hydrolases family 28 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0015399 primary active transmembrane transporter activity IEP Predicted GO
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Predicted GO
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 95 430
No external refs found!