1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. GRMZM2G004878

GRMZM2G004878


Description : high mobility group A


Gene families : OG_42_0003364 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003364_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G004878
Cluster HCCA clusters: Cluster_176

Target Alias Description ECC score Gene Family Method Actions
Glyma.02G245100 No alias high mobility group A 0.05 Orthogroups_2024-Update
Glyma.14G215100 No alias high mobility group A 0.03 Orthogroups_2024-Update
Glyma.14G215200 No alias high mobility group A 0.04 Orthogroups_2024-Update
Solyc04g007890 No alias HMG-Y-related protein A (AHRD V3.3 *** HMGYA_ARATH) 0.03 Orthogroups_2024-Update
Solyc05g051290 No alias HMG-Y-related A (AHRD V3.3 *** A0A0B0M969_GOSAR) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006334 nucleosome assembly IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004177 aminopeptidase activity IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
InterPro domains Description Start Stop
IPR017956 AT_hook_DNA-bd_motif 109 117
IPR017956 AT_hook_DNA-bd_motif 163 173
IPR017956 AT_hook_DNA-bd_motif 134 145
IPR017956 AT_hook_DNA-bd_motif 88 99
IPR005818 Histone_H1/H5_H15 13 75
No external refs found!