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Description : plant VAP homolog 12
Gene families : OG_42_0000404 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000404_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Zea release: GRMZM2G006219 | |
| Cluster | HCCA clusters: Cluster_112 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Bradi2g60150 | No alias | vamp/synaptobrevin-associated protein 27-2 | 0.04 | Orthogroups_2024-Update | |
| Cre03.g196900 | No alias | vesicle associated protein | 0.01 | Orthogroups_2024-Update | |
| Glyma.17G146400 | No alias | Plant VAMP (vesicle-associated membrane protein) family protein | 0.04 | Orthogroups_2024-Update | |
| HORVU6Hr1G060760.3 | No alias | contact site protein (VAP27) of... | 0.02 | Orthogroups_2024-Update | |
| LOC_Os02g42940 | No alias | MSP domain containing protein, expressed | 0.03 | Orthogroups_2024-Update | |
| LOC_Os08g05890 | No alias | MSP domain containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
| Seita.1G251500.1 | No alias | contact site protein (VAP27) of... | 0.04 | Orthogroups_2024-Update | |
| Sobic.003G419100.1 | No alias | contact site protein (VAP27) of... | 0.03 | Orthogroups_2024-Update | |
| Sobic.004G302800.1 | No alias | contact site protein (VAP27) of... | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Predicted GO |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Predicted GO |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Predicted GO |
| MF | GO:0003779 | actin binding | IEP | Predicted GO |
| MF | GO:0004089 | carbonate dehydratase activity | IEP | Predicted GO |
| MF | GO:0004512 | inositol-3-phosphate synthase activity | IEP | Predicted GO |
| MF | GO:0005215 | transporter activity | IEP | Predicted GO |
| CC | GO:0005622 | intracellular | IEP | Predicted GO |
| BP | GO:0006020 | inositol metabolic process | IEP | Predicted GO |
| BP | GO:0006021 | inositol biosynthetic process | IEP | Predicted GO |
| BP | GO:0006810 | transport | IEP | Predicted GO |
| MF | GO:0008092 | cytoskeletal protein binding | IEP | Predicted GO |
| BP | GO:0009119 | ribonucleoside metabolic process | IEP | Predicted GO |
| MF | GO:0015095 | magnesium ion transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0015267 | channel activity | IEP | Predicted GO |
| BP | GO:0015693 | magnesium ion transport | IEP | Predicted GO |
| BP | GO:0015969 | guanosine tetraphosphate metabolic process | IEP | Predicted GO |
| CC | GO:0016020 | membrane | IEP | Predicted GO |
| MF | GO:0016835 | carbon-oxygen lyase activity | IEP | Predicted GO |
| MF | GO:0016836 | hydro-lyase activity | IEP | Predicted GO |
| MF | GO:0022803 | passive transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0022857 | transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0030151 | molybdenum ion binding | IEP | Predicted GO |
| CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | Predicted GO |
| BP | GO:0034035 | purine ribonucleoside bisphosphate metabolic process | IEP | Predicted GO |
| BP | GO:0042126 | nitrate metabolic process | IEP | Predicted GO |
| BP | GO:0042128 | nitrate assimilation | IEP | Predicted GO |
| BP | GO:0042278 | purine nucleoside metabolic process | IEP | Predicted GO |
| BP | GO:0046128 | purine ribonucleoside metabolic process | IEP | Predicted GO |
| CC | GO:0046540 | U4/U6 x U5 tri-snRNP complex | IEP | Predicted GO |
| BP | GO:0051179 | localization | IEP | Predicted GO |
| BP | GO:0051234 | establishment of localization | IEP | Predicted GO |
| BP | GO:0055085 | transmembrane transport | IEP | Predicted GO |
| BP | GO:0070838 | divalent metal ion transport | IEP | Predicted GO |
| BP | GO:0071941 | nitrogen cycle metabolic process | IEP | Predicted GO |
| BP | GO:0072511 | divalent inorganic cation transport | IEP | Predicted GO |
| CC | GO:0097525 | spliceosomal snRNP complex | IEP | Predicted GO |
| CC | GO:0097526 | spliceosomal tri-snRNP complex | IEP | Predicted GO |
| CC | GO:0120114 | Sm-like protein family complex | IEP | Predicted GO |
| BP | GO:1901068 | guanosine-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:2001057 | reactive nitrogen species metabolic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000535 | MSP_dom | 10 | 112 |
| No external refs found! |