GRMZM2G009412

Description : Zinc-binding ribosomal protein family protein

Gene families : OG_42_0001870 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001870_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea release: GRMZM2G009412
Cluster	HCCA clusters: Cluster_35

Target	Alias	Description	ECC score	Gene Family Method
161986	No alias	Zinc-binding ribosomal protein family protein	0.06	Orthogroups_2024-Update
A4A49_42104	No alias	60s ribosomal protein l44	0.06	Orthogroups_2024-Update
A4A49_63762	No alias	60s ribosomal protein l44	0.04	Orthogroups_2024-Update
At4g14320	No alias	Zinc-binding ribosomal protein family protein...	0.03	Orthogroups_2024-Update
Brara.A02648.1	No alias	component *(eL42) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Brara.D00648.1	No alias	component *(eL42) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Brara.G00538.1	No alias	component *(eL42) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Brara.H01878.1	No alias	component *(eL42) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Cre06.g310700	No alias	Zinc-binding ribosomal protein family protein	0.05	Orthogroups_2024-Update
Glyma.08G181300	No alias	Zinc-binding ribosomal protein family protein	0.03	Orthogroups_2024-Update
HORVU5Hr1G081590.1	No alias	component *(eL42) of large ribosomal-subunit (LSU) proteome	0.02	Orthogroups_2024-Update
HORVU5Hr1G101600.1	No alias	component *(eL42) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
HORVU7Hr1G104300.1	No alias	component *(eL42) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Kfl00989_0050	kfl00989_0050_v1.1	(q96499\|rl44_goshi : 200.0) 60S ribosomal protein L44 -...	0.01	Orthogroups_2024-Update
MA_10427098g0010	No alias	(at4g14320 : 163.0) Zinc-binding ribosomal protein...	0.03	Orthogroups_2024-Update
MA_99845g0010	No alias	(at4g14320 : 160.0) Zinc-binding ribosomal protein...	0.03	Orthogroups_2024-Update
Mp2g25770.1	No alias	component RPL36a of LSU proteome component	0.03	Orthogroups_2024-Update
PSME_00003754-RA	No alias	(at4g14320 : 164.0) Zinc-binding ribosomal protein...	0.03	Orthogroups_2024-Update
Potri.010G251500	No alias	Zinc-binding ribosomal protein family protein	0.07	Orthogroups_2024-Update
Pp1s115_63V6	No alias	60s ribosomal protein l44	0.05	Orthogroups_2024-Update
Pp1s22_326V6	No alias	60s ribosomal protein l44	0.08	Orthogroups_2024-Update
Pp1s2_415V6	No alias	60s ribosomal protein l44	0.05	Orthogroups_2024-Update
Pp1s6_198V6	No alias	60s ribosomal protein l44	0.08	Orthogroups_2024-Update
Pp1s74_73V6	No alias	60s ribosomal protein l44	0.06	Orthogroups_2024-Update
Seita.9G438600.1	No alias	component *(eL42) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Sobic.001G018800.1	No alias	component *(eL42) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Sobic.002G321800.2	No alias	component *(eL42) of large ribosomal-subunit (LSU) proteome	0.02	Orthogroups_2024-Update
Solyc03g112850	No alias	60S ribosomal protein L44 (AHRD V3.3 *** RL44_GOSHI)	0.03	Orthogroups_2024-Update
Solyc06g071530	No alias	60S ribosomal protein L44 (AHRD V3.3 *** RL44_GOSHI)	0.03	Orthogroups_2024-Update
Sopen03g031930	No alias	Ribosomal protein L44	0.02	Orthogroups_2024-Update
Sopen06g027820	No alias	Ribosomal protein L44	0.06	Orthogroups_2024-Update
evm.model.contig_2517.1	No alias	(at4g14320 : 166.0) Zinc-binding ribosomal protein...	0.11	Orthogroups_2024-Update
evm.model.tig00000489.11	No alias	(q96499\|rl44_goshi : 166.0) 60S ribosomal protein L44 -...	0.06	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000439	transcription factor TFIIH core complex	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003849	3-deoxy-7-phosphoheptulonate synthase activity	IEP	Predicted GO
MF	GO:0003937	IMP cyclohydrolase activity	IEP	Predicted GO
MF	GO:0004109	coproporphyrinogen oxidase activity	IEP	Predicted GO
MF	GO:0004643	phosphoribosylaminoimidazolecarboxamide formyltransferase activity	IEP	Predicted GO
MF	GO:0004814	arginine-tRNA ligase activity	IEP	Predicted GO
CC	GO:0005643	nuclear pore	IEP	Predicted GO
CC	GO:0005743	mitochondrial inner membrane	IEP	Predicted GO
BP	GO:0006289	nucleotide-excision repair	IEP	Predicted GO
BP	GO:0006420	arginyl-tRNA aminoacylation	IEP	Predicted GO
BP	GO:0006839	mitochondrial transport	IEP	Predicted GO
BP	GO:0006848	pyruvate transport	IEP	Predicted GO
BP	GO:0006850	mitochondrial pyruvate transmembrane transport	IEP	Predicted GO
MF	GO:0010011	auxin binding	IEP	Predicted GO
BP	GO:0015718	monocarboxylic acid transport	IEP	Predicted GO
MF	GO:0016634	oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor	IEP	Predicted GO
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	Predicted GO
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Predicted GO
MF	GO:0017056	structural constituent of nuclear pore	IEP	Predicted GO
MF	GO:0019238	cyclohydrolase activity	IEP	Predicted GO
CC	GO:0019866	organelle inner membrane	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
CC	GO:0030119	AP-type membrane coat adaptor complex	IEP	Predicted GO
CC	GO:0030131	clathrin adaptor complex	IEP	Predicted GO
MF	GO:0030515	snoRNA binding	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
MF	GO:0042562	hormone binding	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
BP	GO:0045116	protein neddylation	IEP	Predicted GO
BP	GO:0051259	protein complex oligomerization	IEP	Predicted GO
BP	GO:0071840	cellular component organization or biogenesis	IEP	Predicted GO
BP	GO:0098656	anion transmembrane transport	IEP	Predicted GO
BP	GO:1901475	pyruvate transmembrane transport	IEP	Predicted GO
BP	GO:1903825	organic acid transmembrane transport	IEP	Predicted GO
BP	GO:1905039	carboxylic acid transmembrane transport	IEP	Predicted GO
BP	GO:1990542	mitochondrial transmembrane transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000552	Ribosomal_L44e	19	93

External Links

No external refs found!

GRMZM2G009412

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation