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  5. GRMZM2G009443

GRMZM2G009443


Description : CLPC homologue 1


Gene families : OG_42_0000227 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000227_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G009443
Cluster HCCA clusters: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Bradi3g44335 No alias CLPC homologue 1 0.02 Orthogroups_2024-Update
Bradi3g44341 No alias CLPC homologue 1 0.02 Orthogroups_2024-Update
Cre11.g467644 No alias heat shock protein 101 0.01 Orthogroups_2024-Update
HORVU4Hr1G090440.2 No alias organellar chaperone *(Clp-p/Clp-m) 0.03 Orthogroups_2024-Update
HORVU5Hr1G031470.8 No alias Unknown function 0.03 Orthogroups_2024-Update
Pp1s23_102V6 No alias atpase aaa-2 domain protein 0.04 Orthogroups_2024-Update
Pp1s252_87V6 No alias atpase aaa-2 domain protein 0.02 Orthogroups_2024-Update
Pp1s81_51V6 No alias atpase aaa-2 domain protein 0.03 Orthogroups_2024-Update
Sobic.001G333500.1 No alias organellar chaperone *(Clp-p/Clp-m) 0.03 Orthogroups_2024-Update
Sobic.008G081900.1 No alias chaperone component *(ClpC) of chloroplast Clp-type... 0.04 Orthogroups_2024-Update
Solyc03g118340 No alias Chloroplast ATP-dependent Clp protease chaperone protein... 0.02 Orthogroups_2024-Update
Sopen03g037240 No alias AAA domain (Cdc48 subfamily) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000313 organellar ribosome IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
MF GO:0004743 pyruvate kinase activity IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
CC GO:0005761 mitochondrial ribosome IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006732 coenzyme metabolic process IEP Predicted GO
BP GO:0006733 oxidoreduction coenzyme metabolic process IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
MF GO:0008987 quinolinate synthetase A activity IEP Predicted GO
BP GO:0009108 coenzyme biosynthetic process IEP Predicted GO
BP GO:0009435 NAD biosynthetic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
BP GO:0019359 nicotinamide nucleotide biosynthetic process IEP Predicted GO
BP GO:0019362 pyridine nucleotide metabolic process IEP Predicted GO
BP GO:0019363 pyridine nucleotide biosynthetic process IEP Predicted GO
BP GO:0019674 NAD metabolic process IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
MF GO:0030955 potassium ion binding IEP Predicted GO
MF GO:0031420 alkali metal ion binding IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
BP GO:0046496 nicotinamide nucleotide metabolic process IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0072524 pyridine-containing compound metabolic process IEP Predicted GO
BP GO:0072525 pyridine-containing compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 296 412
IPR003959 ATPase_AAA_core 633 807
IPR004176 Clp_N 181 232
IPR004176 Clp_N 105 157
IPR019489 Clp_ATPase_C 814 893
No external refs found!