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  5. GRMZM2G010085

GRMZM2G010085


Description : chromatin remodeling factor17


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G010085
Cluster HCCA clusters: Cluster_205

Target Alias Description ECC score Gene Family Method Actions
177985 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 Orthogroups_2024-Update
At2g28290 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
Bradi1g18910 No alias chromatin remodeling 5 0.04 Orthogroups_2024-Update
Bradi1g47367 No alias chromatin remodeling factor CHD3 (PICKLE) 0.03 Orthogroups_2024-Update
Bradi2g12950 No alias chromatin-remodeling protein 11 0.03 Orthogroups_2024-Update
Bradi2g35740 No alias chromatin-remodeling protein 11 0.04 Orthogroups_2024-Update
Cre07.g325700 No alias transcription regulatory protein SNF2, putative 0.02 Orthogroups_2024-Update
Glyma.02G281000 No alias chromatin remodeling 5 0.04 Orthogroups_2024-Update
Glyma.10G250500 No alias Homeotic gene regulator 0.03 Orthogroups_2024-Update
LOC_Os06g08480 No alias CHD3-type chromatin-remodeling factor PICKLE, putative, expressed 0.02 Orthogroups_2024-Update
Mp5g06580.2 No alias chromatin remodeling factor (Snf2) 0.03 Orthogroups_2024-Update
Seita.2G320900.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.04 Orthogroups_2024-Update
Seita.2G419600.1 No alias component *(CHR5) of SAGA transcription co-activator... 0.03 Orthogroups_2024-Update
Seita.4G112400.1 No alias SMARCA component *(SYD/BRM/MINU) 0.04 Orthogroups_2024-Update
Sobic.002G308700.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.03 Orthogroups_2024-Update
evm.model.tig00000217.24 No alias (at2g28290 : 140.0) Encodes a SWI2/SNF2-like protein in... 0.01 Orthogroups_2024-Update
evm.model.tig00000983.26 No alias (at2g13370 : 651.0) chromatin remodeling 5 (CHR5);... 0.03 Orthogroups_2024-Update
evm.model.tig00020960.24 No alias (at2g13370 : 202.0) chromatin remodeling 5 (CHR5);... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006338 chromatin remodeling IEA InterProScan predictions
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA InterProScan predictions
MF GO:0031491 nucleosome binding IEA InterProScan predictions
BP GO:0043044 ATP-dependent chromatin remodeling IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
InterPro domains Description Start Stop
IPR001650 Helicase_C 340 452
IPR015195 SLIDE 741 851
IPR015194 ISWI_HAND-dom 601 662
IPR000330 SNF2_N 50 317
No external refs found!