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  5. GRMZM2G014276

GRMZM2G014276


Description : Transducin family protein / WD-40 repeat family protein


Gene families : OG_42_0001305 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001305_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G014276
Cluster HCCA clusters: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
80645 No alias Transducin family protein / WD-40 repeat family protein 0.02 Orthogroups_2024-Update
Bradi5g20040 No alias Transducin family protein / WD-40 repeat family protein 0.09 Orthogroups_2024-Update
Brara.J02073.1 No alias SSU processome assembly factor *(TOZ) 0.04 Orthogroups_2024-Update
Glyma.05G038000 No alias Transducin family protein / WD-40 repeat family protein 0.03 Orthogroups_2024-Update
Glyma.17G089100 No alias Transducin family protein / WD-40 repeat family protein 0.02 Orthogroups_2024-Update
HORVU2Hr1G106110.11 No alias SSU processome assembly factor *(TOZ) 0.08 Orthogroups_2024-Update
LOC_Os04g50660 No alias WD domain, G-beta repeat domain containing protein, expressed 0.02 Orthogroups_2024-Update
Potri.013G079600 No alias Transducin family protein / WD-40 repeat family protein 0.05 Orthogroups_2024-Update
Potri.019G047300 No alias Transducin family protein / WD-40 repeat family protein 0.02 Orthogroups_2024-Update
Pp1s301_39V6 No alias wd40-repeat protein 0.03 Orthogroups_2024-Update
Seita.7G219600.1 No alias SSU processome assembly factor *(TOZ) 0.07 Orthogroups_2024-Update
Sobic.006G198600.1 No alias SSU processome assembly factor *(TOZ) 0.09 Orthogroups_2024-Update
Solyc03g097160 No alias Transducin/WD40 repeat-like superfamily protein (AHRD... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
BP GO:0006364 rRNA processing IEA InterProScan predictions
CC GO:0032040 small-subunit processome IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000313 organellar ribosome IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Predicted GO
CC GO:0005761 mitochondrial ribosome IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 544 576
IPR001680 WD40_repeat 444 481
IPR001680 WD40_repeat 503 534
IPR001680 WD40_repeat 580 617
IPR001680 WD40_repeat 151 189
IPR001680 WD40_repeat 108 145
IPR001680 WD40_repeat 399 439
IPR001680 WD40_repeat 194 231
IPR013934 SSU_processome_Utp13 682 815
No external refs found!