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  5. GRMZM2G016756

GRMZM2G016756


Description : phytochrome interacting factor 4


Gene families : OG_42_0000449 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000449_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G016756
Cluster HCCA clusters: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
39143 No alias phytochrome interacting factor 3 0.03 Orthogroups_2024-Update
A4A49_38454 No alias transcription factor pif5 0.03 Orthogroups_2024-Update
At2g20180 No alias Transcription factor PIF1... 0.06 Orthogroups_2024-Update
At3g59060 No alias Transcription factor PIF5... 0.06 Orthogroups_2024-Update
Brara.C02178.1 No alias regulatory protein *(PIF) of red/far-red light... 0.03 Orthogroups_2024-Update
Brara.C04242.1 No alias bHLH-type transcription factor 0.03 Orthogroups_2024-Update
Brara.I04061.1 No alias regulatory protein *(PIF) of red/far-red light... 0.05 Orthogroups_2024-Update
Brara.I05268.1 No alias regulatory protein *(PIF) of red/far-red light... 0.05 Orthogroups_2024-Update
GRMZM2G115960 No alias phytochrome interacting factor 3 0.04 Orthogroups_2024-Update
Glyma.08G303900 No alias phytochrome interacting factor 4 0.03 Orthogroups_2024-Update
HORVU2Hr1G060680.1 No alias regulatory protein *(PIF) of red/far-red light... 0.06 Orthogroups_2024-Update
HORVU5Hr1G093310.11 No alias regulatory protein *(PIF) of red/far-red light... 0.05 Orthogroups_2024-Update
LOC_Os03g43810 No alias helix-loop-helix DNA-binding domain containing protein, expressed 0.05 Orthogroups_2024-Update
LOC_Os03g56950 No alias phytochrome-interacting factor 4, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00038811-RA No alias (at1g09530 : 147.0) Transcription factor interacting... 0.04 Orthogroups_2024-Update
Pp1s147_126V6 No alias helix-loop-helix dna-binding domain containing expressed 0.02 Orthogroups_2024-Update
Pp1s69_37V6 No alias dna binding 0.03 Orthogroups_2024-Update
Seita.2G029600.1 No alias regulatory protein *(PIF) of red/far-red light... 0.03 Orthogroups_2024-Update
Seita.9G067200.1 No alias regulatory protein *(PIF) of red/far-red light... 0.05 Orthogroups_2024-Update
Seita.9G160700.1 No alias regulatory protein *(PIF) of red/far-red light... 0.03 Orthogroups_2024-Update
Sobic.001G068301.1 No alias bHLH-type transcription factor 0.04 Orthogroups_2024-Update
Sobic.001G158900.3 No alias regulatory protein *(PIF) of red/far-red light... 0.03 Orthogroups_2024-Update
Solyc07g043580 No alias bHLH transcription factor 052 0.03 Orthogroups_2024-Update
Sopen07g023150 No alias Helix-loop-helix DNA-binding domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Predicted GO
MF GO:0005337 nucleoside transmembrane transporter activity IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009538 photosystem I reaction center IEP Predicted GO
BP GO:0015858 nucleoside transport IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0016832 aldehyde-lyase activity IEP Predicted GO
MF GO:0030410 nicotianamine synthase activity IEP Predicted GO
BP GO:0030417 nicotianamine metabolic process IEP Predicted GO
BP GO:0030418 nicotianamine biosynthetic process IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0072351 tricarboxylic acid biosynthetic process IEP Predicted GO
BP GO:1901264 carbohydrate derivative transport IEP Predicted GO
BP GO:1901642 nucleoside transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR011598 bHLH_dom 200 239
No external refs found!