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  5. GRMZM2G017593

GRMZM2G017593


Description : pentatricopeptide (PPR) repeat-containing protein


Gene families : OG_42_0001517 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001517_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G017593
Cluster HCCA clusters: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Bradi1g01021 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
Brara.F03614.1 No alias endoribonuclease *(SOT1) 0.03 Orthogroups_2024-Update
Glyma.05G113300 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
Glyma.09G013600 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
Glyma.15G118100 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
Glyma.15G118300 No alias pentatricopeptide (PPR) repeat-containing protein 0.05 Orthogroups_2024-Update
Glyma.17G006500 No alias pentatricopeptide (PPR) repeat-containing protein 0.05 Orthogroups_2024-Update
HORVU5Hr1G124070.4 No alias endoribonuclease *(SOT1) 0.04 Orthogroups_2024-Update
Potri.003G089600 No alias pentatricopeptide (PPR) repeat-containing protein 0.04 Orthogroups_2024-Update
Potri.016G006800 No alias pentatricopeptide (PPR) repeat-containing protein 0.05 Orthogroups_2024-Update
Seita.9G005100.1 No alias endoribonuclease *(SOT1) 0.03 Orthogroups_2024-Update
Seita.9G489900.1 No alias plastidial RNA processing factor *(SVR7) 0.03 Orthogroups_2024-Update
Solyc08g077120 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc11g012670 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen08g025700 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen11g007400 No alias PPR repeat family 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000313 organellar ribosome IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Predicted GO
CC GO:0005744 TIM23 mitochondrial import inner membrane translocase complex IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
CC GO:0005761 mitochondrial ribosome IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006839 mitochondrial transport IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
BP GO:0030150 protein import into mitochondrial matrix IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
BP GO:0044743 protein transmembrane import into intracellular organelle IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0065002 intracellular protein transmembrane transport IEP Predicted GO
BP GO:0070585 protein localization to mitochondrion IEP Predicted GO
BP GO:0071806 protein transmembrane transport IEP Predicted GO
BP GO:0072655 establishment of protein localization to mitochondrion IEP Predicted GO
CC GO:0098798 mitochondrial protein complex IEP Predicted GO
BP GO:1990542 mitochondrial transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 504 562
IPR002885 Pentatricopeptide_repeat 466 494
No external refs found!