GRMZM2G018223

Description : IKI3 family protein

Gene families : OG_42_0007541 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007541_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea release: GRMZM2G018223
Cluster	HCCA clusters: Cluster_178

Target	Alias	Description	ECC score	Gene Family Method
At5g13680	No alias	Elongator complex protein 1...	0.03	Orthogroups_2024-Update
Bradi1g24690	No alias	IKI3 family protein	0.04	Orthogroups_2024-Update
Cre08.g372500	No alias	IKI3 family protein	0.02	Orthogroups_2024-Update
HORVU2Hr1G040310.1	No alias	component *(ELP1) of ELONGATOR transcription elongation complex	0.02	Orthogroups_2024-Update
PSME_00014415-RA	No alias	(at5g13680 : 925.0) A subunit of Elongator, a histone...	0.04	Orthogroups_2024-Update
Seita.9G171700.1	No alias	component *(ELP1) of ELONGATOR transcription elongation complex	0.07	Orthogroups_2024-Update
Sobic.006G086600.1	No alias	component *(ELP1) of ELONGATOR transcription elongation complex	0.03	Orthogroups_2024-Update
evm.model.contig_3434.2	No alias	(at5g13680 : 122.0) A subunit of Elongator, a histone...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0002097	tRNA wobble base modification	None	Extended
BP	GO:0002098	tRNA wobble uridine modification	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006400	tRNA modification	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0033588	Elongator holoenzyme complex	IEA	InterProScan predictions
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
CC	GO:0005730	nucleolus	IEP	Predicted GO
MF	GO:0008134	transcription factor binding	IEP	Predicted GO
MF	GO:0009982	pseudouridine synthase activity	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR006849	Elp1	174	968
IPR006849	Elp1	1	168

External Links

No external refs found!

GRMZM2G018223

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation